rs252586332 SNP Detail

Summary

• ID
  rs252586332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94260361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACCGCCC CCACGTACGG
  AAACTCCCCA TGCTCCGCGC CCCCCAGGAC CGTCACCCCC AGCTCGCCCT GGGGTCCCCG
  CTTCACGGTG CACTCGTGAA CGCGGCCAGT CCAGTGGTTC TTCTTCTGGA TCACTTTCGA
  CATGATGAGT TACAGCCCCT CCTCGAAAAC AAAATTCAAA TTAAAGAAAA AAAGAAAAAG
  R
  AAAGAAAACT GCTAAAACGA GAGACAGGTG CCCCCACAGC ACGAGCCCCC GGAGCGGCGG
  GCTCACGGGA GAAGCATCTC TCGGAGCGCG GGAGCGAGCT ACTCGAGCCT CCTCGCCCGA
  CTCTCTCGCG CTCTCAAGCC ATCATAAAAC AAACTTTCCG GGCTCCGTGA AGAGCCCTGC
  ACGGGCGCCC GCGAGCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321866891	CHEV_6_94233374	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252586332					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94260361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	within coordinates
Gm31661	predicted gene, 31661	631 bp upstream
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	mRNA-UTR
Rr634854	regulatory region 634854	912 bp distal
Rr634855	regulatory region 634855	381 bp distal
Rr634856	regulatory region 634856	within coordinates
Rr634857	regulatory region 634857	527 bp proximal
Rr634858	regulatory region 634858	697 bp proximal
Rr634859	regulatory region 634859	1198 bp proximal
Tssr62172	transcription start site region 62172	135 bp downstream
Tssr62173	transcription start site region 62173	195 bp downstream
Tssr62174	transcription start site region 62174	361 bp downstream
Tssr62175	transcription start site region 62175	420 bp downstream
Tssr62176	transcription start site region 62176	455 bp downstream
Tssr62177	transcription start site region 62177	468 bp downstream