rs252558920 SNP Detail

Summary

• ID
  rs252558920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132571869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTTGAA TATGCTTGGT
  CCAGGGAGTG GCACTATTTG GAGGTTTGGA CTTGTTGAAA TAAGTGTATC ATTGTAGGCT
  TGGGCTTTAA GTCCTGTATC CTGGCTACCT GGAAGTCAGT CTTCCACTAA CAGCCTTCAG
  GTGAAAATGT AGAACTCTCA GCTCCTCCTG CACGATGCCT GCCTGGATGC TGCCATGCTC
  Y
  AGCCTTGATG ATAATGGACT GAACCTATGA ACCTATAAAC CAGCTCCAAT TAAATGTTTT
  CAGCATAAGA GTTGCCTTTG TCGGGCTGGC GAGATGGCTC AGCAGTTAAG AGCACCGACT
  GCTCTTCCGA AGGTCCTGAG TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCATCCG
  TAATGAGATC TGATGCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336791	CHEV_4_132400473	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252558920					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132571869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	1093 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	1389 bp upstream
Rr367719	regulatory region 367719	1286 bp downstream
Rr367720	regulatory region 367720	1099 bp downstream
Rr601096	regulatory region 601096	1446 bp distal
Rr601097	regulatory region 601097	1434 bp distal
Rr601098	regulatory region 601098	899 bp distal
Rr601099	regulatory region 601099	1097 bp distal
Tssr43718	transcription start site region 43718	1613 bp upstream
Tssr43719	transcription start site region 43719	1374 bp upstream