rs252543354 SNP Detail

Summary

• ID
  rs252543354
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA CACACACACA
  C
  AGTGTGGAGA CTTTGGGAGA AACAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869959	CHEV_3_109375419	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252543354					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479817 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	67 bp proximal
Rr583432	regulatory region 583432	1143 bp proximal
Rr583433	regulatory region 583433	1417 bp proximal
Tssr31300	transcription start site region 31300	1468 bp upstream
Tssr31301	transcription start site region 31301	1500 bp upstream
Tssr31302	transcription start site region 31302	1518 bp upstream
Vav3	vav 3 oncogene	Intron