rs252532271 SNP Detail

Summary

• ID
  rs252532271
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57044373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGAAT TTCTTGCCAT
  ACTTTGGCAT TAGGATTTAA ACCAGTGCCT TTAGATGTCA CCTGCTCAAC GAAGAGCAAC
  ATGTCTGCTT CCGCTCGTCC CAATCGTTCC CGCTGCTGCC TCTACTCCAA CTGGCTCCCA
  GGCCCGGGCC TGTCGGTAGG ATAAGGACAA TTGCCTTGCC CCTCCACCCA GCAGTGGACC
  S
  GGCTCCTCCC CCGCTGTCAG CCGCTGTGCC CTGACCCGCC CAGTCCCGCC TCCTGGGAAG
  CAACAACTGC TTCCCGTTTT GGAGGCAAAC TGCTTCCTGG GGCGAAGGGA CGCCCGACCC
  CCACCCCCAC CCCACCCCCT AGCGTGCTTC GATCTGGCTG GCTCTTCTCT GGCGGTGATG
  GCGAAAGTGT GTGGTCTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss358069190	MGP_WTSI_3_56940874	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs252532271					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358069190	MGP_WTSI_3_56940874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57044373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	within coordinates
Gm8177	predicted gene 8177	131 bp upstream
Gm64707	predicted gene, 64707	125 bp upstream
Rr375016	regulatory region 375016	within coordinates
Rr577070	regulatory region 577070	within coordinates
Rr577071	regulatory region 577071	136 bp proximal