rs252509988 SNP Detail

Summary

• ID
  rs252509988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82462273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTTTG GGTTCCAGGG
  ATCAAATTTA GACGATGATC AGTTTTGATG ATCAGTTTTG GCAACAAGCA CCTGCTGAGC
  CATGTCATCA GGCCCACGTG ACAGGTTCTT TAGAGACATA ATTGTGTCTC AGTGAGGTAA
  GCCTTAATCT AGGGTAACTG GCCTGGAACA GATGAAAGGT TGACAGAAAT GTGTATAGAG
  Y
  GAGACCATAT AAAGATACAA GGACAAGGAA CCAGATGCAA GGATCAGAGG CCCGATATAA
  ACCAAGGAAA GATCCTCAAC CCTGCTGATA ACCTTGGTCT CAGATGTGAG ACTCCAACTG
  TGAGGTGATT GCCTTTGTTT AAACTGCTAG ATTTTGTGGC ATTTGATTGT GGCAGTTCCA
  TCAAACTAAA GCAAGTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321185794	CHEV_4_82189940	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252509988					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82462273 () rs orientation: forward

Symbol	Name	Function Class
Gm11266	predicted gene 11266	within coordinates
Rr594369	regulatory region 594369	1440 bp distal
Rr594370	regulatory region 594370	1707 bp distal
Rr594371	regulatory region 594371	686 bp distal