rs252505335 SNP Detail

Summary

• ID
  rs252505335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98693651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGAGA TGGATTGGGC
  TAGAGAAATG GCTCAGAGCA TAAGAGTCCC TTTCAGAGGG GTCTGCATGT GGTTCCCACG
  CAGGCAGCTC CCAAGCACCT GTAACTCCAG CTCCAGACGA TGATCATGGC TGCCCAGGGC
  ACTTGCACAC GCGTGAAGAC GAATTAACTA TAACAAGAAT AAATTTTTAA AGGAAAGAAA
  Y
  ATACTGTTGG AATCTGAGGA AGGGAGGAGC TGCGGAAGGA GGAAATCAGG GGGCAGGACA
  AGGTGCCACA GAGAGAGACA GGGCACTCCA GGGCACTTAG TCTCTGTCTG CTAAGTAGAA
  AAGCTCCCCA CCCCCACTCC CAAGCGCCAG CAAAGGCAGG TCAGGCCTTT CCATCAGAGA
  ACAGATACCT GGCTTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321221746	CHEV_4_98472105	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252505335					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98693651 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595791	regulatory region 595791			342 bp distal
Rr595792	regulatory region 595792			within coordinates