rs252505283 SNP Detail

Summary

• ID
  rs252505283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51112731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGCTCT GTATTTTTAA
  TTAAAAATTA ACCACAGTGC TGAGCCACCG GATAATTCGT TGCATCTATT ACCAATAGAC
  CTCCACGCTG AATGGTGACG AGTAATACTT TCTCCTCAAA AGCTAATCGC AAGCGATATC
  CTGACATGTA ACTTAGTTTT GGTGTTGGGG TTTTGTTTTG TTTTTGTTTT TTGGGGGTGG
  R
  GGGGGTTGGT TTGTCTTTTT GAAACAGGAT CTCGTTTAGC CCACAATAGC CTTAGGTTCA
  TTATGTAGTT GAAACTTCTA ATCCTCCTAC CTCAGCCTTC TGAGTGCTCC CATTACAGAT
  GTGCACTACT GTGCCCTGGT TTGTGTAGTA TTGGGATGGA ATTCAGTACC CACTGCACCA
  TAGGGAAGTT CTAGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357924939	MGP_WTSI_3_51009232	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252505283					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357924939	MGP_WTSI_3_51009232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51112731 () rs orientation: forward

Symbol	Name	Function Class
Rr576238	regulatory region 576238	1113 bp distal
Rr576239	regulatory region 576239	644 bp distal
Rr576240	regulatory region 576240	1275 bp proximal