rs252485959 SNP Detail

Summary

• ID
  rs252485959
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107835805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAGGTT TTGGTTCATG
  GTCACTGCGC CTGTGGTGAG GCAGAGCATC ATGGTAGGGA GAGTGTGTGG GAAGAGAGTG
  TGTGGGGAGT GAGTGTAGAA CAGAACTGCT TAGCCTGCGG CACCTGAAAA ACAAAAGGAA
  AGGAAGGGGA GAAGCTGTTG TTCTAACACG TCCTCCAGAC ACACAGCAGT GACTTGTCCC
  C
  AGTCCCAATA AGTTAAAAAC CTATCAGTGA ATGAGTTCAG AGCCCCATGA TCTATCTACT
  CACTCCCCCA AGACCCCACA TCTGAACACT GCTGCCCTGG GACCAGACCT TCAACACGCA
  AGATGGGGGT GGGGGCATAT TTCAAATAAA ACCTGTAACC AGCTATAATC CCAGCCGCCC
  CCAAGAACAG AGCACCCATT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251885	CHEV_4_107651213	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252485959					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107835805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			860 bp proximal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant