rs252466169 SNP Detail

Summary

• ID
  rs252466169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75770560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCAGAC ACTCAAGAAG
  AGGGCATCAG ATTTCGTTAT GGATGGTTGT GAGCCACCAT GTGGTTGCTG GGATTTGAAC
  TCGGGACCTT CAGAAGAGCA GTCGGCACTC TTAACCACTG AGCCATCTCG CCAGCCCCCT
  GCCCCCCCTT TTTTAAAAGA TGTATTTATT TATTTCGTGT ATGTGGGTAC ATTGTCGCTG
  Y
  CTTCAGACAC ACTAGAAGAG GGCATCAGAT CTCATTATAG ACAGTTGTGA GCCACCATGT
  AGTTGCTGGG AATTGAACTC AGGACCTCTG GAAGAGCAGA CAGCTCTCAT AACCACTGAA
  CCATCTCTCT CCAGCCCCAG TCAGTGCTCT TAACAGTTAA GCCACCTCTC TAGCCTGAGT
  CTGGCATTTT TTTAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934095	MGP_WTSI_10_75397471	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252466169					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934095	MGP_WTSI_10_75397471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75770560 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Cpgi1736	CpG island 1736	1849 bp distal
Cpgi1737	CpG island 1737	921 bp proximal
Rr401998	regulatory region 401998	1018 bp upstream
Rr434182	regulatory region 434182	1586 bp distal
Rr434183	regulatory region 434183	1359 bp distal
Rr434184	regulatory region 434184	685 bp proximal
Tssr94147	transcription start site region 94147	1373 bp downstream
Tssr94148	transcription start site region 94148	1349 bp downstream
Tssr94149	transcription start site region 94149	1130 bp upstream
Tssr94150	transcription start site region 94150	1152 bp upstream
Tssr94151	transcription start site region 94151	1500 bp upstream
Tssr94152	transcription start site region 94152	1548 bp upstream
Tssr94153	transcription start site region 94153	1579 bp upstream
Tssr94154	transcription start site region 94154	1598 bp upstream
Tssr94155	transcription start site region 94155	1678 bp upstream