rs252458820 SNP Detail

Summary

• ID
  rs252458820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCTAGT TTCCTCTAAG
  CACACTCAGC CCTCAGGTAC AAGATAAATA CATTCTGGAC ATCTAGTGTG CAGCACAATC
  TCTCTAGCTA GGAATGATAT AGACTGGAAA CTCTCAAAAG AATGAACTCA TGAATCTTCT
  CCCACCACTG AGTCCTTACA AACCCCCAAC ACCTCACACA CACACATGCG TTAGCTGTGG
  R
  GTGATGGTGA TTGAAAGCGT TAATTATCAA AATTGTGTCA TCAATTCTAA TGTGTGCACA
  CACACACACA CATGAGGGTG TGAGCACAGA CACACATATA TTATTATTTT TAAAGTTATG
  CCTTCATACA GCTGAAAAGG GAAAACAAAT AAATCGGGAA GCTACAGTGA GCCAGGCGTC
  TGTGTTCATA CCTAAGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320531958	CHEV_2_142424445	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252458820					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440629 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	403 bp proximal