rs252438238 SNP Detail

Summary

• ID
  rs252438238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggcgcgggc ccggcTGACG CGGGCAGCTC
  CAGGACTCGC CACCCGCAGC GCTCAGGCTC TTCTCTCTTG ACAGCACCGC AGCGATGGAT
  GGAGATGGTG ATCCAGGTAT CCGCTGCTGG CCCCGCTAGA TACAGACTCG GGAGACAGGG
  Y
  GGACCAGCGC CGCAGAAGGC GCTCAAACTT TCGCGCCAGG AAAACCCTAG AGATAGTCTA
  GGGAGCAGGT TTCTGCCTGG TGTCGTGGTG TGGAGGGAGG AGGACGCCTG GGTCTCCAAA
  ATGGCATCGG AGGACTCTGG CATCTCAGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417741	CHEV_4_147534865	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252438238					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			within coordinates
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			550 bp upstream
Rr398857	regulatory region 398857			427 bp downstream
Rr604608	regulatory region 604608			125 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			560 bp downstream
Tssr40264	transcription start site region 40264			126 bp downstream
Tssr40265	transcription start site region 40265			104 bp downstream
Tssr40266	transcription start site region 40266			76 bp downstream
Tssr44596	transcription start site region 44596			1154 bp upstream
Tssr44597	transcription start site region 44597			937 bp upstream
Tssr44598	transcription start site region 44598			919 bp upstream
Tssr44599	transcription start site region 44599			826 bp upstream
Tssr44600	transcription start site region 44600			684 bp upstream