rs252435539 SNP Detail

Summary

• ID
  rs252435539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:69722706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATCAAT TCCTTGGATT
  GTTAGCCGGT TGTTATCATT TTTCCCCCAA AGAGGGTCTC CCTACAAAGC CCAGGATAGC
  CCTGAGCTTT CCATCTTCAT GTGCCATGAT TGGTCCTTGG GGTGCATTCA AAATAGGAAA
  TCCTGTTTTG ACATTTTGTT TTATAATATT AAGAGTGTTT TTATTTATTT ATTTATTTTT
  K
  AAGGACTTTA ATGAATTCTA GCCCAAAGGA AGAGCAAAAT TGGGCTCAGG GAGTGAATGG
  ATACTGTGCA GTCTCACCTC TGAGGGACAG GACATGTTGT AGGAACACTT CTCTTACCAG
  TGTCTGGGGG TCAAAGGGGT CTGCAGTCAA GGATGGCAGG TTGCCCCTGG GCCACACTCC
  CACAGCTCCA GGCCTCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss388953673	MGP_WTSI_13_69713465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	G	G	G	G	G	G	G	G	T	G	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs252435539					SNP	G	T	G	G	G	G	G	G	G	G	T	G	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388953673	MGP_WTSI_13_69713465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69722706 () rs orientation: forward

Symbol	Name	Function Class
Srd5a1	steroid 5 alpha-reductase 1	mRNA-UTR