rs252429521 SNP Detail

Summary

• ID
  rs252429521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145124794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTCTAC CACTTTAGTT
  GCTTTCTGTC ATGTACTTGG TCATATGAAT GAGGGAAACA TTACTCAGGT CCCAAGTTAA
  TTTTTCCATG CCACATTTTA TTTATGCTAT GTAGGTAAAG TACCTATGAA GTCAGGCCCT
  GTGCCCACTC CCAGGATGCT ACCATGTATA CTCACTAGAC CTTTTATTCT TTAGAGATGG
  Y
  CTTTTCTGTC TATATCAAGC ACACCAAATT CCTAGGTAGC ATGCAAGTAT AATCTAGTGA
  TTAGAGAGGG ACATGAAAAT CCCAATTATG GTGTGTGTGT TCTTAAAGGG GGACAGGGCT
  AACTTACTAT GAGAAAGGAC AGGCCACTTC TATAAGCAGG AAAAGTTAGG GCCTAGTGGT
  TCAGACTCTT CAGGGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008310	CHEV_3_145082003	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252429521					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145124794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			995 bp upstream
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
D530037P16Rik	RIKEN cDNA D530037P16 gene			287 bp upstream
Rr586779	regulatory region 586779			1006 bp distal
Rr586780	regulatory region 586780			807 bp distal