rs252423142 SNP Detail

Summary

• ID
  rs252423142
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60409436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTATATG GAGAGTGCTG
  TATTTCAGTC CAGTGTGCTT TTTGCCAAGT TTACAGGGAG GAAGACGCCC TGCTTGAGAG
  GGCTGCCGCT TTTCCTCCCT TTCTGGTGGT TTTGTAGTGC GTCACTCAAA AACTGTAAGA
  AAAGTAAGTA TAGAGCTTTC CGGGTGGAGC CACAGTAGGC TGGTAGAACA GCTTTCATGA
  W
  AAGTAGTCAG TATATGGACT GGTTTTTTAA ATAAAAACAA GAGAAATATG AAACCTTTCC
  TCACTCCTCC CCCCGCCCCC CCAAAAAAAA GACCGAGTCT GATGTTGTTA GTAATGTGCC
  ATATGAGAAT ACTTTGATTT TAGAGGATGT AACGTGAGAT TTAAAGAAAT TACACACACA
  CACACACACA CACACACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137422	MGP_WTSI_3_60305937	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252423142					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137422	MGP_WTSI_3_60305937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60409436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13210	CpG island 13210			90 bp distal
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577410	regulatory region 577410			727 bp distal
Rr577411	regulatory region 577411			1484 bp proximal
Tssr887	transcription start site region 887			135 bp downstream
Tssr29278	transcription start site region 29278			1310 bp downstream
Tssr29279	transcription start site region 29279			1220 bp downstream
Tssr29280	transcription start site region 29280			773 bp downstream
Tssr29281	transcription start site region 29281			740 bp downstream
Tssr29282	transcription start site region 29282			627 bp downstream
Tssr29283	transcription start site region 29283			107 bp downstream
Tssr29284	transcription start site region 29284			15 bp downstream
Tssr29285	transcription start site region 29285			255 bp upstream
Tssr33421	transcription start site region 33421			254 bp upstream
Tssr33422	transcription start site region 33422			181 bp upstream