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rs252423142 SNP Detail
Summary
  • ID
    rs252423142
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:60409436 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCTTATATG GAGAGTGCTG
    TATTTCAGTC CAGTGTGCTT TTTGCCAAGT TTACAGGGAG GAAGACGCCC TGCTTGAGAG
    GGCTGCCGCT TTTCCTCCCT TTCTGGTGGT TTTGTAGTGC GTCACTCAAA AACTGTAAGA
    AAAGTAAGTA TAGAGCTTTC CGGGTGGAGC CACAGTAGGC TGGTAGAACA GCTTTCATGA
    W
    AAGTAGTCAG TATATGGACT GGTTTTTTAA ATAAAAACAA GAGAAATATG AAACCTTTCC
    TCACTCCTCC CCCCGCCCCC CCAAAAAAAA GACCGAGTCT GATGTTGTTA GTAATGTGCC
    ATATGAGAAT ACTTTGATTT TAGAGGATGT AACGTGAGAT TTAAAGAAAT TACACACACA
    CACACACACA CACACACACA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358137422 MGP_WTSI_3_60305937 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252423142 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358137422 MGP_WTSI_3_60305937 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:60409436 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13210 CpG island 13210 90 bp distal
Mbnl1 muscleblind like splicing regulator 1 Intron
Noncoding-Transcript-Variant
Rr577410 regulatory region 577410 727 bp distal
Rr577411 regulatory region 577411 1484 bp proximal
Tssr887 transcription start site region 887 135 bp downstream
Tssr29278 transcription start site region 29278 1310 bp downstream
Tssr29279 transcription start site region 29279 1220 bp downstream
Tssr29280 transcription start site region 29280 773 bp downstream
Tssr29281 transcription start site region 29281 740 bp downstream
Tssr29282 transcription start site region 29282 627 bp downstream
Tssr29283 transcription start site region 29283 107 bp downstream
Tssr29284 transcription start site region 29284 15 bp downstream
Tssr29285 transcription start site region 29285 255 bp upstream
Tssr33421 transcription start site region 33421 254 bp upstream
Tssr33422 transcription start site region 33422 181 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory