rs252417697 SNP Detail

Summary

• ID
  rs252417697
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76289637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGGTCAT TTCCACCTTT ACATGTGCTA
  GAAAATAATT TGCTTTTGAG ATGTGTCCCA GAATCAAAAT ACAGAAAGGG TTGGAATTAC
  ATGCTTGAAG ATGCATGGGA ATAAATATGA ATGTCTTTTT ATGAAGAACT ATGAAGTGAT
  W
  CTTGATGCCC AAGTCTATTA TCTGTCCTGA GATTCTTATG CCTCAaaatg acacaagctt
  ggttcccagt acttaatggc aggtagttca tagccacctg taacttcaaa ggatccaaag
  tattcttttg ggctcattag gcacctacac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170660	CHEV_4_76017304	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252417697					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76289637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			450 bp downstream
Rr594092	regulatory region 594092			521 bp distal
Rr594093	regulatory region 594093			323 bp proximal