rs252377053 SNP Detail

Summary

• ID
  rs252377053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156147780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAAGTT ACGCTGAGTG
  TCTGACAACC CTGTTTGTGA GTGTTCTCAG GGATTAAAGT TGTCTTTAAA CAACCTGGAC
  TGGCTCTCCA CCGGCTTCTT CCTCCTGCAG CTACCACCCA TTGTTCCCCT ATCCTCATTG
  ATTTCTAAAT AGAATAAAGT GGCCAGAGCT GTCTGCGTCT ATGCTCGCCA ACTGGTCTAG
  M
  GAAGGCAAGG TTGCCATAAC TCATCATAGG GTTTTGAGCA AAATGATCCA TCACCTCAGG
  ATACCCCACT GCAGAACGTC CTGCTTGAAG AGATGGAGCC TAGGATGGTC ATCCAAGTCC
  AGATCCGGCT TCATGGTAGG GTTCAGTAGG CCTAGAACAG TTCATCTCTT TCCCATAGAT
  AGAAAAAAGA TCCTGCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445029	CHEV_4_155437432	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252377053					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156147780 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	951 bp upstream
Rr377474	regulatory region 377474	565 bp upstream
Rr606657	regulatory region 606657	549 bp proximal
Rr606658	regulatory region 606658	1034 bp proximal
Tssr40789	transcription start site region 40789	1016 bp upstream