rs252351088 SNP Detail

Summary

• ID
  rs252351088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31365178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAATAGA TCCAGCTTAG
  TTTAGAGTCC ACAACATTTC ATGGATTTGA GGTTTCTGAA GATCTACAAG GATTTTCAAT
  CTATGACTTG TAGCATTTAA CGTCTTGCTT TTTCTTCCCT TGTCTGTGAA ATGAACATCT
  CCTAGGACTG TAGAGAGAGT TGACATGCTC TTGAAGTTGC CTAACTCAGT GCTAGACACA
  Y
  GCAGAGATCG GTAAGTGAGA GTCTTTCTCT TGCCTCTATT AAAATAATAA TACATTTCAG
  AAAACAAGAA GCATGTTATT TATGTATGTG TTAGTGGAAT GGAGCTGATG CCATGTAAAC
  CTCTTCTATG AGAAATAAAA GTTACTAAGT TTGTTGTGTT CAGGGAGATT ACTGGCTGGC
  TGCTGTCTTT TCACGTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357438474	MGP_WTSI_3_31209951	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252351088					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357438474	MGP_WTSI_3_31209951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31365178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13053	CpG island 13053	637 bp distal
Gm15496	predicted gene 15496	within coordinates
Rr574907	regulatory region 574907	662 bp distal
Rr574908	regulatory region 574908	569 bp distal
Rr574909	regulatory region 574909	83 bp distal
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	651 bp upstream
Tssr32914	transcription start site region 32914	798 bp upstream
Tssr32915	transcription start site region 32915	764 bp upstream
Tssr32916	transcription start site region 32916	705 bp upstream
Tssr32917	transcription start site region 32917	656 bp upstream