rs252304852 SNP Detail

Summary

• ID
  rs252304852
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137494412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatgggcct ttgagtgtgc ctgtggggga
  ttattaagat taaacttaat tTCAGAGATC TGGTGACAGC ATTCCCAGGC CAGAGTACAG
  GGTAAGGAGA AAGAActtct tgcctggggg ttcaacgtaa ttggctgctt ccagctccct
  K
  cggtcttcac ttccccacct taaagctctg tgcttggaac tgtgagccaa aatgaaccct
  tctgtttgtt tgttttctga gacagggttt ctctgtgtag ccctggatga cctggaactc
  gctctgtaga ccaggctggc ctcgaactca                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367253	CHEV_4_137323016	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252304852					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137494412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			675 bp upstream
Rr602708	regulatory region 602708			686 bp distal
Rr602709	regulatory region 602709			442 bp distal
Rr602710	regulatory region 602710			1727 bp proximal
Tssr44134	transcription start site region 44134			657 bp upstream
Tssr44135	transcription start site region 44135			635 bp upstream
Tssr44136	transcription start site region 44136			600 bp upstream