rs252287098 SNP Detail

Summary

• ID
  rs252287098
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75772338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGGGT CTTATGGCTC
  AGATGGCATC CACCGCCGCA GGCGTAGCCG TGGGCTCAGC TGTAGGGCAT GTCATGGGTA
  GCGCCCTGAC CAGTGCCTTC AGTGGGGGAA ATTCAGAGCC TGCCCAGCCT GCCGTCCAGC
  AGGTGAGCGG GAGGACTCAA GAAACGGAGG CAGGATTCAC ACATGGTTGC ATAAGGAGCT
  K
  CTTAAGAGTC CAATGAGGAG TGGCCCAATG TATTCAGAGT TGCCTCAGAC CCAGGATTTT
  GAGGGTCCTA ACCCTCATGG TCGTTAAATC TACTGTCACT CGCTGGAAAG CTCGCCCAGC
  CCTCATTTGA AGGCAAAATA TCTGACTGTC GGAGACTGAC ATGCACTAGA TCTATTTTTT
  TAAAGATATA TTTATTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934124	MGP_WTSI_10_75399249	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252287098					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934124	MGP_WTSI_10_75399249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75772338 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Cpgi1737	CpG island 1737	64 bp distal
Gm867	predicted gene 867	1219 bp downstream
Rr384937	regulatory region 384937	766 bp upstream
Rr401998	regulatory region 401998	459 bp downstream
Rr434184	regulatory region 434184	921 bp distal
Rr434185	regulatory region 434185	339 bp proximal
Tssr94149	transcription start site region 94149	632 bp downstream
Tssr94150	transcription start site region 94150	596 bp downstream
Tssr94151	transcription start site region 94151	245 bp downstream
Tssr94152	transcription start site region 94152	212 bp downstream
Tssr94153	transcription start site region 94153	182 bp downstream
Tssr94154	transcription start site region 94154	171 bp downstream
Tssr94155	transcription start site region 94155	87 bp downstream
Tssr94156	transcription start site region 94156	658 bp upstream
Tssr94157	transcription start site region 94157	672 bp upstream
Tssr94158	transcription start site region 94158	793 bp upstream
Tssr98154	transcription start site region 98154	1884 bp downstream