rs252284962 SNP Detail

Summary

• ID
  rs252284962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5530404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATTGCTA GTGCCTTTGG AAAGCAACTG
  GAGTTAGCTG Ctacatacat acacatacat acatacatac atacatacat acatacacac
  acacacacac acacacacac acCCTTCCGT CATCTCAGGA AGTGTGCTTC TTGCTGCTCA
  W
  TGGCTCTTAT GGTGCAGCTC CTGACATGGA AGCAGAACCT GAAATGTTAG AACTGGGAGA
  CTCCAGGCGT TGAGTTCTTC CTCGCTCAGG CCTGGGCAAA TGATTCTAAG TGTATCCAAT
  TTAAGACACT CTTAGAGCTT TTACAGAAGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451366	CHEV_5_5480404	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252284962					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5530404 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Pttg1ip2	PTTG1IP family member 2	1261 bp upstream
Rr607007	regulatory region 607007	1341 bp proximal
Rr607008	regulatory region 607008	1356 bp proximal
Rr607009	regulatory region 607009	1413 bp proximal
Tssr45089	transcription start site region 45089	1215 bp downstream
Tssr45090	transcription start site region 45090	1147 bp upstream
Tssr50049	transcription start site region 50049	1344 bp upstream
Tssr50050	transcription start site region 50050	1329 bp upstream
Tssr50051	transcription start site region 50051	1297 bp upstream
Tssr50052	transcription start site region 50052	1268 bp upstream