rs252248329 SNP Detail

Summary

• ID
  rs252248329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115895147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCGCTGGG ACACGCGCGG CCAGACACGC ACACACGCAC
  GCACACACAC TCTCACACAC GCAGAGGCAC AGGGGGGAAA GAAGCCGGTG AATAATTTTG
  Y
  TACTATTTTT TAAAATACTG GCCGCCATCA TCATCAAGCA ACCAGCAGCA GCCAGCTCAA
  AGGGAGAGAA GGCATGGGGC AGGGCCCTGT AGGAGAGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355357858	MGP_WTSI_2_115890402	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	T	C	C	C	C	C	C	T	T	T	T	T	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252248329					SNP	C	C	C	C	T	T	C	C	C	C	C	C	T	T	T	T	T	T	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355357858	MGP_WTSI_2_115890402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115895147 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			1523 bp downstream
Cpgi12067	CpG island 12067			within coordinates
Cpgi12068	CpG island 12068			866 bp proximal
Cpgi12069	CpG island 12069			1871 bp proximal
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562985	regulatory region 562985			38 bp distal
Rr562986	regulatory region 562986			45 bp proximal
Rr562987	regulatory region 562987			1163 bp proximal
Tssr25720	transcription start site region 25720			766 bp upstream
Tssr25721	transcription start site region 25721			68 bp upstream
Tssr25722	transcription start site region 25722			67 bp downstream
Tssr25723	transcription start site region 25723			93 bp downstream
Tssr25724	transcription start site region 25724			462 bp downstream
Tssr25725	transcription start site region 25725			551 bp downstream
Tssr25726	transcription start site region 25726			979 bp downstream
Tssr25727	transcription start site region 25727			1007 bp downstream
Tssr25728	transcription start site region 25728			1025 bp downstream
Tssr25729	transcription start site region 25729			1052 bp downstream
Tssr25730	transcription start site region 25730			1119 bp downstream
Tssr25731	transcription start site region 25731			1132 bp downstream
Tssr25732	transcription start site region 25732			1278 bp downstream
Tssr25733	transcription start site region 25733			1368 bp downstream