rs252220401 SNP Detail

Summary

• ID
  rs252220401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117540415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC AGTGGGGATG GCCCAGCCCA
  Y
  TGTGGGCGGT GTTATTCCTT AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321279888	CHEV_4_117355823	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252220401					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117540415 () rs orientation: forward

Symbol	Name	Function Class
Dmap1	DNA methyltransferase 1-associated protein 1	965 bp upstream
Rr367679	regulatory region 367679	812 bp downstream
Rr598199	regulatory region 598199	455 bp distal
Tssr42990	transcription start site region 42990	993 bp upstream
Tssr42991	transcription start site region 42991	939 bp upstream