rs252200713 SNP Detail

Summary

• ID
  rs252200713
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94447033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAGCAC ATAACATGTT
  AAAAATAAAT CTTTGCCGGG TGTGGTGGCG CACGCCTTTA ATCCCAGCAC TCCGGAGGCA
  GAGGCAGAGG CAGGCGAATT TCTGAGTTTG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA
  GGACAGCCAG GGCTACACAG AGAAAGCCTG TCTCCAGAAA AAAAAAAAAA ATGGCCTCAT
  K
  TTTTTGTGAT TTTTCCCCAG GCTCTCTTAA TTACCCATTT TGATTAAAAT CTTTCTCTAG
  GACATAGGGA TAATCAGTTG ATCGCTCTCA AGACATAAGA ACTGAATGTA GGGCTGTAGA
  GATGGCTCAG TGGTTAAGAG CACATTCCAG AGGTCCTGAG TTCAATTCCC AGCACCCGCA
  TGGTGGCTCA CAGCCATCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321211516	CHEV_4_94225487	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252200713					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94447033 () rs orientation: forward

Symbol	Name	Function Class
Caap1	caspase activity and apoptosis inhibitor 1	2000 bp upstream
Cpgi14451	CpG island 14451	1827 bp distal
Gm10306	predicted gene 10306	1718 bp downstream
Rr595335	regulatory region 595335	1510 bp distal
Rr595336	regulatory region 595336	243 bp distal
Rr595337	regulatory region 595337	674 bp proximal
Tssr42442	transcription start site region 42442	1994 bp upstream