rs252184552 SNP Detail

Summary

• ID
  rs252184552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152055424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGGCA GAGCAGCAGA
  TCGTGAACTC ACTTTGTAGC CTTGAATTTG TTACTTTTTT TCCTTTCCTT TTTTTTTTTT
  TTTTTTTCTT TTTGGTTATT TTGATGGAGT CTCATAAAGG CAAGGCAGAA ACTTGCTGTG
  TAGCCCAGGC TAGCCTGGAA CTTGCTGTGT AGCCCAGGCT AGCCTGGAAC TTGTGATCCT
  Y
  CTCTCTCCAC TTCTGAATAG CTGGGATTAT TGGCTTGGAC CACCAGTTCT GGCAGATGGA
  GTCTTTTTGC TTGTTTGTTT TTAATAGAAG TACATATGGT GAGAACCTTA TGGGTATTAT
  AAAATCCTTC AGGCCTAATT CTCTTGAGAA CCTTATACTT ATTCTAGGAT ATATACTCTT
  GTTTTTTTTT TTTTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028731	CHEV_3_152012751	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252184552					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152055424 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	821 bp proximal
Tssr32407	transcription start site region 32407	1213 bp downstream
Tssr32408	transcription start site region 32408	217 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron