rs252176388 SNP Detail

Summary

• ID
  rs252176388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102418576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGCTTT TCACCTTGGC
  AGCTACTCTA TGCGATGGTG GGAGAAAACA ATGATCAGGG TACAAACTAT AGAATGCTAT
  CTATCCTATG GCACTGAATA AGTGTGATAA GTACATCTGA AGTATTTAGT GCTTTGCTTA
  GAGATAGTGA AAGCCCAATG TTATGTGCAG AAGTGATATA TTGACTTGTT TTCCATATAC
  Y
  TCTAATTGAT AAGATGGTAG GAAGTCCAAA TACAAAACTG CTTTCAGTAA TAGATTAGGA
  GAGATGTGGG GTTCTGGAAA TTGAGCTCAG CTAGTGAAGT GCTGGCCACG TAAGCATGAG
  GACCCAGGTT TGGTCTTTAG CACGTATGTA AAGAGCTGGG CATGATGGTC AGGGGGAGTT
  GGAGACAAGT GGATCACGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439066	CHEV_2_102428388	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252176388					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102418576 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	within coordinates
Rr561706	regulatory region 561706	1728 bp proximal
Rr561707	regulatory region 561707	1960 bp proximal