rs252165289 SNP Detail

Summary

• ID
  rs252165289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATTGA TTCTGCTATT
  TTTCTGTGTC CCCGTTGACA CAAATACATA TGACATTCTC AATGAAATTG CTTCCAAAGT
  GGGCCAGAGG TCCCCAGAGC CTATATCAGA CATTCCAGTG AGGAGAACAA TGAAGAATTA
  GATGGAGAAA CTAAAGATGC TGTCATGGTG CTTCTTAAAT GAGTCTTTGT ATTTAAGAGA
  Y
  GCTGAAGCAG ATTTGTAATA CTTTCAGTAA GTCTCATTGT TGGCCTGATC ATCACTCTGT
  CAGATGTATA GAAAGTGTAA ACTCATTTGC CAGGAATCCA TGAAATCTGA TTGTCTGTGT
  TTATAGTTAT GACCCCTTAG TGGGAAATAG TGTAAATATG TTCTTTTCAT AGAAGGTCCA
  TCAGCCATGG TAATGTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320993580	CHEV_3_141253273	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252165289					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			440 bp distal
Tssr32042	transcription start site region 32042			1755 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant