rs252140386 SNP Detail

Summary

• ID
  rs252140386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGGGC ACTCACAGAC
  AGGACATTCC GCAAGCTCTT CCTGGGTGAC CCAGGGACTG CACCTGTGGC CTGGGTTTCC
  CTTGATCATG CCCTGACAAC CCGCGTCTGG GAAATTCAGT CAGAATCAAT CCAAGACCAC
  AATTTAGAGA CAGGTAAGCT TGACGGTGGT TGCAGCGTTT GGTGAAACAA AACGTCAAGA
  Y
  CAGCCTCTGC TACATAGAGA ATCTGAGGCT ATCCTGAGTT ACAGTGAATC CTGTTTCAGA
  ACAAATCCCT CAAAGTCCCA TTGTCTCTCT GGCCTTGAAG CTCTTGAGCC CCGGATCTAG
  GATACTGCTT GTTGGACTAA AGGACTCACT AATCACCTTT CCCAACCCTG CCCAGGTATA
  CCACCTCTAG TAAACAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394796	CHEV_7_117308693	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252140386					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764386 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	244 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	769 bp distal
Rr653199	regulatory region 653199	1893 bp distal
Rr653200	regulatory region 653200	1914 bp distal
Rr653201	regulatory region 653201	255 bp distal
Rr653202	regulatory region 653202	859 bp distal
Rr653203	regulatory region 653203	240 bp distal
Rr653204	regulatory region 653204	184 bp distal
Rr653205	regulatory region 653205	185 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	871 bp proximal
Rr653208	regulatory region 653208	1304 bp proximal
Tssr2367	transcription start site region 2367	253 bp upstream
Tssr2368	transcription start site region 2368	1047 bp downstream
Tssr68492	transcription start site region 68492	858 bp downstream
Tssr74253	transcription start site region 74253	304 bp upstream
Tssr74254	transcription start site region 74254	1173 bp downstream