rs252108959 SNP Detail

Summary

• ID
  rs252108959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5498042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTCTGG TAATGAGCAT
  CTGGTGCAGG TTCTTAAAGA CACCGAGAAA TAACCCAGAG GTGGATGACC AGACATCAGC
  AACTGACTCT TGAGAGAAAA GAGGAAGAAA AGTGGGCAAA GTAAATGCAA TTCATAGCAC
  TGTGGCTCCA GCACTGAAGC TAAAGGAGCT TAGACAGCAC CGCTGGCTGC ACACAGACAC
  Y
  GCCAGAACCC ATAATTCAGG CTTGGAATCA CAAAAGCTCA GGGAAGCAAA GAACTGTCCA
  GGAGATTATA AAAACAAAAA CAAAAACAAA AAGAAGCAAG GCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCGTCAGTCA CTATATATCT TCTTTGTTTT CTGTTCAGTT GTAACACATT
  ATATGACTTG GACAATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729296	CHEV_6_5448042	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252108959					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5498042 () rs orientation: forward

Symbol	Name	Function Class
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	1764 bp upstream
Rr378865	regulatory region 378865	541 bp downstream
Rr626152	regulatory region 626152	1243 bp distal
Rr626153	regulatory region 626153	674 bp proximal
Tssr59756	transcription start site region 59756	1752 bp upstream
Tssr59757	transcription start site region 59757	1726 bp upstream