rs252089044 SNP Detail

Summary

• ID
  rs252089044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50399584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG AGGGGAAAGG GGTAAGGGGA
  R
  GGGGTGAAGG ATGGGGGGGA TGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320757857	CHEV_3_50249057	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252089044					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50399584 () rs orientation: forward

Symbol	Name	Function Class
Rr576159	regulatory region 576159	1031 bp distal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1595 bp downstream
Tssr29027	transcription start site region 29027	1382 bp downstream
Tssr33168	transcription start site region 33168	1712 bp upstream
Tssr33169	transcription start site region 33169	1670 bp upstream
Tssr33170	transcription start site region 33170	1639 bp upstream
Tssr33171	transcription start site region 33171	1615 bp upstream
Tssr33172	transcription start site region 33172	1586 bp upstream
Tssr33173	transcription start site region 33173	1543 bp upstream
Tssr33174	transcription start site region 33174	1520 bp upstream
Tssr33175	transcription start site region 33175	1355 bp upstream