rs252070379 SNP Detail

Summary

• ID
  rs252070379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113599575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gacttctga ctccagctcc aggaaatcca
  atcctccctg tgttcatcag cccctggatg agctcacaca tgcacacccg tacaTTTTTA
  ATTTTTTGTT TATTTATTTA CTTTGGTTtt ttgggttttt gagacaaggt ttctctgtct
  R
  tcctggaact cactttgtag accaggctgg cctcgaactc agaaatcctc ctgcctctgc
  ctcccaagtg ctgggattaa aggcgtgcgc caccactgcc cggcCCGTAC ATTTAAAAAA
  AGCTCATCTG ATGAAACTTC TGCCAGAAAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911136	CHEV_6_113572608	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252070379					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113599575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1057 bp proximal
Rr636555	regulatory region 636555	967 bp proximal
Tssr58233	transcription start site region 58233	1374 bp upstream
Tssr58234	transcription start site region 58234	1434 bp upstream
Tssr58235	transcription start site region 58235	1512 bp upstream
Tssr62461	transcription start site region 62461	914 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1380 bp upstream