rs252067384 SNP Detail

Summary

• ID
  rs252067384
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171805603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGAG GGGAGGGGAG
  GGGAGGGGAG GGGAGGGGAG GGGAGGGGAG GGGAGGGGAG GGGAGAATGT ACATATGATA
  CATTATCCTA GAACATTCAA AATCATACTC TGAGAATTGG TTAGGGTTTA GAGATGAGGA
  AAAGTGTTAA CTACAAATTG GTGGCATGGA GAGACCTTTA TTTTTCTAAA GACAATTTCT
  C
  ACTCACTGTG TAGCCTGTGC TGACCTCACA CTCACTGGCC TCCTACCTCC GCCCTGAGGG
  CTGGGTTTCC AGGTGTGCAC CATCACACCA GGACCACATG GGAACTTTTT AGTGTGGCAG
  GGTTGTTCTG TATCTTGACT GTAAGAGTGG TTTTATCTTT ATATGCCCCA GTACAGGGGA
  ACGCCAGGGC CAAAAAGGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	SPRET/EiJ
ss352396313	MGP_WTSI_1_173908167	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	SPRET/EiJ
rs252067384					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352396313	MGP_WTSI_1_173908167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171805603 () rs orientation: forward

Symbol	Name	Function Class
Rr423419	regulatory region 423419	1819 bp proximal