rs252061630 SNP Detail

Summary

• ID
  rs252061630
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53101969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATACTCT CCCGCCTAGA
  GTTAAGAGCA GAATTATTGT AATTTTTGTA ATCATCATTT TCTTGACCTC TGTCTAGTTT
  AAGAAAGGAG ATTTAAGTTG CTATATCTGT CTGTGCCTTC AGTTTATTGC AAAAAGTTGC
  TTTGAGTACA CACATGACAG AAATACGAGC TTATGCATAT CTGCAGTTGC CCCCTCCCCC
  C
  AAAAGCAGTA ATTTAAATAA CATTTTCAAA TGGTTAAACT CTTTTATGAT GCCATCAGAC
  AATTTGACAA GTGGTTGTCT CTTAAAGTTT GATTGATGTT GAGCCCAGGA ACGGCTGTTT
  TTCTCTAGCT GTGGTGACAC ACGGGGCAGG CGTCAAATCT ACTCGGGCTC ATCATCAGGA
  GGAGCCTTTA CCCACCTGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766877	CHEV_3_52998470	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252061630					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53101969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			1067 bp proximal