rs252039782 SNP Detail

Summary

• ID
  rs252039782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137525074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTTTA TTTACAGCGG
  TGCTAGGAAA TTTCCCTTGA GAAATAAGTT TATGTTTTTA CAAAGTGAGA CCAAGTATTG
  GGTAAATTAC TCCTTATTTA TGTATTTCAT AGCAAGGTCA TAATGGCAAA AGCCATTGGG
  GCGGTGAATA AATGAAACTT TGGTCATTTC CCGGCAGTCC TCGTCTGTAA GGAGCTGAGA
  R
  TTAAGACAGC AGTGAGCTCA GAACACAGCA CTTGGCAATT ACTTGCTAGC TAGCGCCAAA
  GGGCTCAAGA TGACAAAAGG CTGGAGATTG TATCTGTGTG CCGAGGGACA TCCGCATCAT
  AAATGATCCC CCTTCCCAAC ATTGGCAGAG CTGAGAAGCT GAAGCAGCAG GCGCTGAAGG
  CTGAAGGGTC CTGTCTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321367545	CHEV_4_137353678	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs252039782					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137525074 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1379 bp upstream
Cpgi15139	CpG island 15139	1061 bp distal
Rr602724	regulatory region 602724	1390 bp distal
Rr602725	regulatory region 602725	1434 bp distal
Rr602726	regulatory region 602726	889 bp distal
Rr602727	regulatory region 602727	1299 bp distal
Tssr1350	transcription start site region 1350	1467 bp upstream
Tssr44149	transcription start site region 44149	1438 bp upstream
Tssr44150	transcription start site region 44150	1402 bp upstream