rs252029119 SNP Detail

Summary

• ID
  rs252029119
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTTTCA AGCTATATAA
  ACATCAAGGG GTAGTTAAAT AACAATTTTA GATATGGAAT ATATTGTGAA AACAATGTGG
  AACATTAGTT AAGAGAATAT GTTTAAATAT GAACTCACTA CTTGATATTT TTGTAATATA
  TATCTTACAA AAGTTAGGGT GTCTATAAAA ATCTTAAAAA GTATTTATTT CTTTTCTTAT
  W
  TCTGAATCAC AAAAAGGGGG TCTGCAGGGG ATCCTGGTTG ATGACTTTTA AGAGTTTTGC
  TTCTCAGATG TAGTGGCTTT AACTGTGAGC TAGCAAACGC TCTTTGCAGC TTGTCTTCAT
  TACTTTAAAG TAAAATCAGA CTCACACACC TATCTTGCTT CCGCATTTTA AACTTTACAC
  CAAACTTGGT AGAATTTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593265	MGP_WTSI_3_79689615	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs252029119					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593265	MGP_WTSI_3_79689615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	364 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375226	regulatory region 375226	within coordinates
Rr578605	regulatory region 578605	434 bp distal
Rr578606	regulatory region 578606	141 bp proximal
Rr578607	regulatory region 578607	661 bp proximal
Rr578608	regulatory region 578608	1110 bp proximal
Rr578609	regulatory region 578609	1159 bp proximal
Rr578610	regulatory region 578610	1199 bp proximal
Tssr29596	transcription start site region 29596	1122 bp downstream
Tssr29597	transcription start site region 29597	1101 bp downstream
Tssr29598	transcription start site region 29598	603 bp downstream
Tssr29599	transcription start site region 29599	574 bp downstream
Tssr29600	transcription start site region 29600	525 bp downstream
Tssr29601	transcription start site region 29601	496 bp downstream
Tssr29602	transcription start site region 29602	256 bp upstream
Tssr29603	transcription start site region 29603	347 bp upstream
Tssr29604	transcription start site region 29604	419 bp upstream
Tssr29605	transcription start site region 29605	488 bp upstream
Tssr29606	transcription start site region 29606	521 bp upstream
Tssr29607	transcription start site region 29607	1191 bp upstream
Tssr29608	transcription start site region 29608	1209 bp upstream
Tssr33752	transcription start site region 33752	470 bp downstream
Tssr33753	transcription start site region 33753	488 bp downstream
Tssr33754	transcription start site region 33754	1103 bp downstream