rs252011638 SNP Detail

Summary

• ID
  rs252011638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145575078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAGCAT AACACCATAC
  ATGATTTTAA ACCACAGAGA GACTGAGAGA GACTGGAGAG ACAGCTCAGT GTTTAAGAGC
  ATTTGCTGAT TTTGCAAAGG ACCTGGGTTC GATTCCCAGT ATCCACACAG CTCTGGCTCC
  AAGGGATATG GTGCTCTATT CTGACCTTTG TGGACACCAG AGATTGCCAT GGGGCAATTA
  Y
  GCAAAATAAA GCTAAAGAAA AATATTTAGC TGAATAAAGT TTGAAGGTTG AAAAAAAAAA
  AGTATATCAA GGCCAAAAGT TATTCCCCCA CAAAGACTGC TCAACGTTTC TGTAGTCTGT
  GCAGGTGAAT GTAAGGAACT AAGAGTTGCT GGAGTGATGA GAAACAGGCA TTTGATCACC
  CTGACAGAAC AGGCAGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss363599765	MGP_WTSI_4_145438411	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	T	C	C	T	T	C	C	C	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs252011638					SNP	T	C	C	T	T	C	C	T	T	C	C	C	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599765	MGP_WTSI_4_145438411	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145575078 () rs orientation: forward

Symbol	Name	Function Class
Rr604403	regulatory region 604403	362 bp distal