rs251962780 SNP Detail

Summary

• ID
  rs251962780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102710064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAGACA AGAAATCGCA
  AAGTTGCCCA AACTGATCTT AAACTCAGTC TGTAGCAAAG AAGGGGCCCT GGATTAGAAA
  TGCCCCAGCC TCTGGGGCGC TAGAGCAGTG TCCACTGTAC CAGGTCTGGC TGAACCTTCC
  CTGATACATT CACTTGCTCT GCTGGTTGTT TTCTGACCAT TTGCTGTTTT GTTTTGTTTT
  K
  TTTTTTTAAC CACAGGACTG AAAAAACGTA CAAGGAAGGC CTTTGGAATA CGGAAGAAAG
  AAAAAGACAC TGACTCTACG TATGTACCTT AGAGTTTGCC CCACTGGCTT CAGTCTAAGT
  CACTGATGTT GGTTTAAAGA GGGCCTGCCC CAAAGGCTCT TCTGAGAGCG GATGCTCATT
  TGTTTGGTTT TCTGGGCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362647991	MGP_WTSI_4_102525472	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	T	T	G	T	T	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	T	G	G	T	T	T	T	T	T	T	G	T	T	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251962780					SNP	G	G	G	T	G	G	T	T	G	T	T	T	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	T	G	G	T	T	T	T	T	T	T	G	T	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362647991	MGP_WTSI_4_102525472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102710064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69082	predicted gene, 69082			within coordinates
Rr596318	regulatory region 596318			326 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant