rs251946840 SNP Detail

Summary

• ID
  rs251946840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53132203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAACTG TTGTGTCATT
  TCCTCAGGCT TTTGAAAGTG ACAAATAGTA ATGTCACAGT GACTTGGTAT TTAACAAATA
  TTATAAGTGA ACGCATGGAA TGGAAGTAAG CCCACAGACA GGAGATATAA TACAGAAATA
  ACTGTAATGC AATGCAATAT ACAACCTCAA ATAAACCGTA ATGTATGCAG GAGCTCCTGG
  R
  GGGTGGGAAA CCAGTAGCTC ACTGCTGGGC AGCAGGGAGG GCTGAATGTT GATGTTTCTA
  GACTTAAACA GCACGGATTT TCATGGCCAA GTCGGAGCAT TAACCTAAGG AACAGAAATG
  TACCTGGCCC TGCATTAATG AAGATGTTCC CAAAAAAAGA CACTCATCTC TTTTAGCCTT
  CCCATCGGCC ATTGAAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767063	CHEV_3_53028704	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251946840					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53132203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576663	regulatory region 576663			881 bp proximal