rs251771578 SNP Detail

Summary

• ID
  rs251771578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121361328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAGTC ACCAGAGGAA
  AAAAAACCCT TAAGTGTCCA GGGATGGTCA CATGGCCAAC AAAACCCAGA TCCAACACAG
  CAGGTGGTGA GCAAGCACAA CAGGAAGGGA GGAGGCCAAG CACCTCTGGG GGTCTCCTCA
  TAGCTCCTCA GGACTCCTCA TAGCTCCTCA GGACTCCTCA TAGCTCCTCA GGACTCCTCA
  Y
  GTCTCCTAAC AGCTCCTCAT GTCTCTTCAC AGCTCCTCAT GTCTCCTCAC AGCTCCTCAC
  AGCTCCTCAT AGCTCCTCAG GACTCCTCCC GTCTCCTCAC AGCTCCTCCC GAGTAACCCT
  CTCAGTCTCA AATGACCTCA CCTGTACAGA GGAAAAGTTA ATTTCTATCC TAGTCTTGAG
  CCCAGTGGGG AAATGTAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
ss359478275	MGP_WTSI_3_121270597	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	PWK/PhJ	WSB/EiJ	ZALENDE/EiJ
rs251771578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359478275	MGP_WTSI_3_121270597	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121361328 () rs orientation: forward

Symbol	Name	Function Class
Gm33547	predicted gene, 33547	within coordinates
Rr584118	regulatory region 584118	within coordinates