rs251756095 SNP Detail

Summary

• ID
  rs251756095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119074135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAAAA CGAGTCTGTC
  TTCCCTTCTG TTGAGGGCTT CTCTCTCCTC TGATAGCCCA CTCTGCTGCC TTCTGCCTCA
  TGTCACGTCA TGATAGTGTC TGTTTTTTTT TTATTCTTTC TAGCCAGTTA TAGTGGCACA
  TGGGAAATAG AAGCAGTCAG TCTATTTCTG TGAACTCAAG GGCAGCCTCC ATAGTGGATT
  Y
  TAGGCCAGCC AGGAACACAC AGTGAGACCC TGATTCAGAT AAAAACAATT GTCTGTATGT
  ATGCATGTGG GCTTGTGCAC ATGGGCAGGC CGTGTTTTTC CCTTTTGGTG GTTTGGTTTT
  GGTTTTGAGA TAGGATCTTG CTATGTAGTG AAAGCTGACA TGGACCTTTG TATAGAAAAA
  CTGGTCTTAG TTCACAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
ss355426322	MGP_WTSI_2_119069390	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ
rs251756095					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426322	MGP_WTSI_2_119069390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119074135 () rs orientation: forward

Symbol	Name	Function Class
Rr563452	regulatory region 563452	738 bp distal
Rr563453	regulatory region 563453	1278 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron