rs251744498 SNP Detail

Summary

• ID
  rs251744498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114156796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGGTAA AATAACACCA
  TTGGCTATAG AACACAGCTT TCACACAGAA ATTGCTCGAA AACAATCTCT GAATTAGAGA
  CAATATCAGC CAGACTGGTC TCCCCTGAGA TTTGTTTTTA AGCCACTCTT CCACCCTGGA
  ATCACCTAAG GAGCCTCTTG AAAGAAAATT GTTACATTTT AACTTATTTC TTTTTATACC
  M
  ACATGTTGGG GAAGGGGTTG TGCATATCAT GGTGCTCATG TGAAGGTCAA GGATGCTTCA
  CAGGAGTCAA TTCTCTCCTT CCATCATGTG GGTCCTCAGA ATGGAACGAA TGTCATCAGA
  CTTGGCATCA GGCACCCTTA ACAGCTGAGC CATCTCACCT CGAGGCCCTA AGGGTTTTGT
  TGGTGGTGTT GGGTTTTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm
ss362912038	MGP_WTSI_4_113972204	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	C	C	C	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm
rs251744498					SNP	A	A	A	A	A	A	C	C	C	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362912038	MGP_WTSI_4_113972204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114156796 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	863 bp proximal
Rr597540	regulatory region 597540	937 bp proximal