rs251743502 SNP Detail

Summary

• ID
  rs251743502
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8632483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGAGCATC ATAGGAACAC TTTCTGATGA
  TAATGAGACA GACGTTTCCT CTAATGTCCT GTGGTCAAAA GGAGAGGGGG TGATAAGCAA
  AGCAACAGAG ATAAAGCTGG GACTACACAT GAGATCTCCT GCCCAGCAGA TGCACTTCAG
  K
  GGCCTGCTCC AGATCAGAAC AGATCTCCCG AGCTTAAAAG GACCTCATTT GACACCTAAG
  CCCAGCCTAA TATTCAAGAC CAAAGGACAT TAGATCTAAC AAGAACTGTC ACCCCACCCT
  CACCAGCTGG GCACATATAT GTATGGTTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321737231	CHEV_6_8582483	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251743502					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8632483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ica1	islet cell autoantigen 1			Intron
				Noncoding-Transcript-Variant
Rr399563	regulatory region 399563			206 bp downstream
Rr626420	regulatory region 626420			936 bp distal
Rr626421	regulatory region 626421			59 bp distal