rs251729970 SNP Detail

Summary

• ID
  rs251729970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101503639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAATGG CTTAACTTGT
  TGTAATGGTT ACAATAGTAT TAACAGTCTA AAGGAGAACA ATTGCTCTAT TGTGGTAAGT
  TATGCAAATG TGCCTCTCAG AATCACTGAT TGTATACTAG GTTCTTAGCA GATTAAGCAT
  ATATATATGT ATATACATAT ATATGTGTAT ATACATATTT TCCTTTTAAG TTTAGAACTT
  Y
  GTGGGTTTTG ACTTTCTAAC CTTGTCTAAA GAGCTGTTTG GTTCAGTTCC TATTCTTTCT
  GAACTGCTTT CTGTAGAGGA CTTGGACTAC TGGATGGTTT CTAAGATGAA GGAAGATTCC
  ACTGAAGAAG GTAAGAATAA GATGGATCTG GAGGAGTGAA AATTGGCCTT AGTTACTTGC
  AGGCCTGCGT TTATTTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362620022	MGP_WTSI_4_101319047	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251729970					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362620022	MGP_WTSI_4_101319047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101503639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	676 bp proximal
Leprot	leptin receptor overlapping transcript	1283 bp upstream
Rr367655	regulatory region 367655	870 bp upstream
Rr398357	regulatory region 398357	1109 bp upstream
Rr596187	regulatory region 596187	786 bp proximal
Rr596188	regulatory region 596188	886 bp proximal
Rr596189	regulatory region 596189	1255 bp proximal
Rr596190	regulatory region 596190	1362 bp proximal
Tssr38009	transcription start site region 38009	1234 bp upstream
Tssr38010	transcription start site region 38010	1270 bp upstream
Tssr38011	transcription start site region 38011	1300 bp upstream
Tssr38012	transcription start site region 38012	1321 bp upstream