rs251706850 SNP Detail

Summary

• ID
  rs251706850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142752277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTGACA GGTTCCTCTG
  AGATTTGGGT ATCCCTGTCT GTTTGACCCA CCAATCCCCA CTTCTAATGA CCACATCTCT
  CTCTTTGTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTTTCTC TCTCTCCCCT CTCTCTGTCG CAGTACACAC GTTGGGGGGT
  R
  TCAAAGGATA ACTATGGGAG TCACTTCTCC TCTTCTACCG TGTGAGTCCC AGGGATTCAG
  CTCTGATCAT CAGGCTTGGC AATGAGAAGT CTTACACACT GAGCCACCTC ACTTGCCTTA
  AAGACCTTTG AGAATATCCC TTTTCTTTGT TTTGTTGAGC CAGAGGTCTC ACTATGTAGC
  CAAGGCTAAC CTCAAATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363563492	MGP_WTSI_4_142615610	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251706850					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363563492	MGP_WTSI_4_142615610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142752277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330411D24Rik	RIKEN cDNA 6330411D24 gene			Intron
				Noncoding-Transcript-Variant
Rr604143	regulatory region 604143			1482 bp proximal
Rr604144	regulatory region 604144			1742 bp proximal
Rr604145	regulatory region 604145			1946 bp proximal