rs251587635 SNP Detail

Summary

• ID
  rs251587635
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141232123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTGGTG GCCCAGAGTG
  AGGCAGGAGC CTGGAGAGGT GCCCAGTGGT TAACAGCCCT ACCTTGAGGA CCACAGTTCA
  TACCTCAGGA CTGATGTAAG GCAGCAATCA TGCAAACAAC CCTAAACACT AACTCCTGTT
  CCAGGAGTCT GAAGGCCTCT TCTAGCCTCT AAGCAGACAT GAATACACGC TCACGCATGC
  G
  CCCACAAATT CAGGCAGGCC TAAGATATGC AGTGAGATTC TGTCAGGGAA TGGGGGCGCC
  TATACTGATT GGTAGTAGAC TCCTGCTCAG GGGGGATTAA ATCTTAGCTC CCATCTCCAT
  CATTTAAAAA AATAAAAAAA AAAAAAAAAA GGAGGGGCTG GCGAGATGGC TCAGTGGTTA
  AGAGCGCCGA CTGCTCTTCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387725	CHEV_4_141060727	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251587635					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141232123 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			15 bp distal
Rr603781	regulatory region 603781			1120 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant