rs251538979 SNP Detail

Summary

• ID
  rs251538979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGACGC TGAGGCTGCT
  GGCACGAGTT GACTGACAAG TTTGAACGGC AGCCGCACAA GCCCTTTTCC TTCAGGGGCT
  GCCAGCTCTT TGTTGTGCTG TGCACGGTTA GCGAGACACA TTTTCTTATT AACTGTTCCT
  TACCCAAGTC ATTATTTTCC AGGAGTGGCG CAGGGAGCTG CCGTGCTGAG TGTCGGGGTC
  S
  GGGCAGCCCA GGTTTTCCTG TGAGCCTGTG TGTGTTTAAA GTTATCTCGC TTAGTTTATC
  TCGGGGGGGG GGGGGGGATG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAAGT GCTAAGTCAC TTGTTTGTTA TCTCCCTCTG CTTGGCTTTA
  GGTAATGGTG ATGGCTCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359366533	MGP_WTSI_3_116671886	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	G	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251538979					SNP	G	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	G	G	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359366533	MGP_WTSI_3_116671886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			Intron
Cpgi13743	CpG island 13743			98 bp distal
Gm52613	predicted gene, 52613			955 bp downstream
Palmd	palmdelphin			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583815	regulatory region 583815			1764 bp distal
Rr583817	regulatory region 583817			691 bp distal
Rr583818	regulatory region 583818			within coordinates
Tssr35360	transcription start site region 35360			417 bp upstream
Tssr35361	transcription start site region 35361			400 bp upstream
Tssr35362	transcription start site region 35362			335 bp upstream
Tssr35363	transcription start site region 35363			276 bp upstream
Tssr35364	transcription start site region 35364			200 bp upstream
Tssr35365	transcription start site region 35365			179 bp upstream
Tssr35366	transcription start site region 35366			153 bp upstream
Tssr35367	transcription start site region 35367			134 bp upstream
Tssr35368	transcription start site region 35368			30 bp upstream
Tssr35369	transcription start site region 35369			1 bp downstream
Tssr35370	transcription start site region 35370			44 bp downstream
Tssr35371	transcription start site region 35371			546 bp downstream