rs251529298 SNP Detail

Summary

• ID
  rs251529298
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113696499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCTCA GGAAGCTGGA
  GCCTGCCATG GCCATGTCCA TCCAGAGCAT GCTGAGTAGC AGCAAACTGC AGATGGTGCC
  TGAAGACAGC ATGGTCTTGG TGGTGAGGAC AGATGACCTG GGGGAGAGAG GGTCTTCTGG
  TAGCCTACTT CATCTCCATG TTATGTGCCT TAGAATTTGC TCAGGCTAGA ATCCAGCAAG
  T
  TTCTAGAAGT AAGGACTGCT GGACGAAGCA AGGCTCTCTT GTCACCATCT TTCAAGGGTG
  GGAGCTGAAG GCTGACCTCT GCTTTTTCAA TCTTTGGAGG CAGACAGAGC CTGATGTGAT
  AGAGGGTTGT CCATTTCAGT GTTGCTTGTC CCTTGCCCTC AGGAGCCTGA TGACAGAGCT
  AATTAGGCTG ACCAGTGAGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911649	CHEV_6_113669532	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251529298					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113696499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D6Oda23	DNA segment, Chr 6, Sen-ichi Oda 23			1422 bp distal
Ghrl	ghrelin			Intron
				mRNA-UTR
Gm44033	predicted gene, 44033			260 bp downstream
Rr636588	regulatory region 636588			1570 bp proximal
Tssr62469	transcription start site region 62469			1825 bp upstream
Tssr62470	transcription start site region 62470			70 bp upstream
Tssr62471	transcription start site region 62471			342 bp downstream