rs251498475 SNP Detail

Summary

• ID
  rs251498475
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAGTGG TCATCTGTTC
  TTGAAGGCAC GCAGATCTGC GTTTAAGGAA GGAGAGGCTA AGTTCAGGCG ACAAGTGCAA
  AACCGATCTA CACTCATTCT ACCTTCTCGA ACGTGACTAA TGGATCAGGA GTACAAAGAT
  TTTACATGGC TGTTCCTCGC ATCCCACCCC AAGCAACAAG ACTCTCCTTT CTCTTCCAAG
  S
  TGGGATGACC AATAGGTTGC TGATGTCAAA GCGGTGGAGT GTATGAGTTT CCCCTTTCCC
  TTTTTTTGTT ATTAGACATT TAAAAAATAA TAATACCAGG AATATGATGA ATACCGGAAA
  CTTACACCAG TCCACAAACA CCACATAGTC TGACACCTGG TGATTAGGAA CGCCCCAAGA
  ATCATCCACG TCTCGATTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440157	MGP_WTSI_6_13789516	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251498475					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440157	MGP_WTSI_6_13789516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839515 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17167	CpG island 17167			336 bp distal
Gpr85	G protein-coupled receptor 85			Intron
				mRNA-UTR
Rr626594	regulatory region 626594			1785 bp distal
Rr626595	regulatory region 626595			572 bp distal
Rr626596	regulatory region 626596			416 bp proximal
Tssr54956	transcription start site region 54956			815 bp downstream
Tssr54957	transcription start site region 54957			774 bp downstream
Tssr59842	transcription start site region 59842			1409 bp upstream
Tssr59843	transcription start site region 59843			1074 bp upstream
Tssr59844	transcription start site region 59844			898 bp upstream
Tssr59845	transcription start site region 59845			827 bp upstream
Tssr59846	transcription start site region 59846			306 bp upstream
Tssr59847	transcription start site region 59847			176 bp upstream
Tssr59848	transcription start site region 59848			78 bp upstream
Tssr59849	transcription start site region 59849			6 bp upstream
Tssr59850	transcription start site region 59850			3 bp downstream
Tssr59851	transcription start site region 59851			379 bp downstream
Tssr59852	transcription start site region 59852			400 bp downstream