rs251421253 SNP Detail

Summary

• ID
  rs251421253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108041298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG ACAATCTATT TCAGTGTCCC
  Y
  CTTTAGCCTC CAAACTTTTG GTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321891474	CHEV_6_108014331	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs251421253					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108041298 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	556 bp upstream
Rr399805	regulatory region 399805	862 bp upstream
Rr399806	regulatory region 399806	1382 bp upstream
Rr636028	regulatory region 636028	within coordinates
Rr636029	regulatory region 636029	635 bp proximal
Rr636030	regulatory region 636030	961 bp proximal
Rr636031	regulatory region 636031	1466 bp proximal
Setmar	SET domain without mariner transposase fusion	708 bp upstream
Tssr58052	transcription start site region 58052	698 bp upstream