rs251418242 SNP Detail

Summary

• ID
  rs251418242
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143905112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAGAAA ATGGAGGAGC
  CACTAATTAA AGCTTTTAAT TGTGCAGATT CGCTGCAGCA AGGCCTCGGC TTTATCTGAA
  ATCTTGGGAG GAGAGGAGGC AGAATCCCAG CTCTGCCCAA TCGACACTTG GCCACGGAGG
  GGGGGGTGGG GGGTGGGGGG GGTTGGGAAT GGGGGAAAAC AACACCCTCC CCCCACCACC
  M
  CCCCTCTGCC GCAGCTTTTT AGCCAGATTT TGGTGGTTAA AAAAAAAAAA AAAAAAAAAA
  AAAAACCAGC AACAAAACAA AACCCCCTCA AAGTCAGACA GGGTAAAAGC CCCTTAATCT
  AATTGCCGGG TGGTCCAAGC TAGGCAAAGG GGTCCTCTTC ACCTGAAGAC CTGCAAAGGG
  ATCCTTCAAC TCCTTTCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062367	MGP_WTSI_3_143862315	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251418242					SNP	A	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062367	MGP_WTSI_3_143862315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143905112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	338 bp distal
Gm43445	predicted gene 43445	89 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	within coordinates
Rr586595	regulatory region 586595	100 bp distal
Rr586596	regulatory region 586596	668 bp distal
Rr586597	regulatory region 586597	within coordinates
Rr586598	regulatory region 586598	1041 bp proximal
Tssr35961	transcription start site region 35961	35 bp downstream
Tssr35962	transcription start site region 35962	1576 bp downstream