rs251296785 SNP Detail

Summary

• ID
  rs251296785
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167262683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGCTCA AGAGGATGAG
  ACAGAAGGAT CGTTCTTTGG GAAAGTGACA TATCTGTTAA GCGTTATTAA GTGGGGGGGG
  GGGGGGGAAC TACCTAGGGT GGAAGGGGCC CTGAAGGAGA ACACCCAGAA GGTCCCATAA
  AGACCTCAGC AGTACCAGGC CAGTTTTAAG CAATACAGAC TAGACAGTTC AAGTTATCTT
  M
  GGTGTTGAAA GCCCAGTGGG CAATGCGCTT GCTACGCAAG CACGAGGACC TCAGTTGGTA
  TTCCCAACAT CCACACAGAA GCCAGGGATA GCTGTTGGCA TCTGTAACCA TAGGGACAGG
  GAGACTGAGA AGGAGGATCC CTGGGAGTTG TTGGCTAGCC ACTATGTCGC GTCCCTAGTT
  TCAGGTTCAC TGTCTCATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356504894	MGP_WTSI_2_167246263	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs251296785					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504894	MGP_WTSI_2_167246263	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167262683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12739	CpG island 12739	355 bp proximal
Gm74973	predicted gene, 74973	464 bp downstream
Rr397507	regulatory region 397507	683 bp upstream
Rr570576	regulatory region 570576	1716 bp distal
Rr570577	regulatory region 570577	1126 bp distal
Rr570578	regulatory region 570578	1378 bp distal
Rr570579	regulatory region 570579	1336 bp distal
Rr570580	regulatory region 570580	within coordinates
Rr570581	regulatory region 570581	706 bp proximal
Rr570582	regulatory region 570582	969 bp proximal
Slc9a8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	Noncoding-Transcript-Variant
Tssr21807	transcription start site region 21807	929 bp upstream
Tssr21808	transcription start site region 21808	943 bp upstream
Tssr21809	transcription start site region 21809	1274 bp upstream
Tssr27774	transcription start site region 27774	688 bp downstream